Use the -f or --fasta flag to specify the path to your FASTA file. For ENSEMBL and Gencode files, the -t or --taxonomy flag is required. This flag should provide the organism’s taxonomy (e.g., ...

I just read the Dada2 paper and worked through the tutorial. Very impressive work and software! I look forward to including Dada2 into the workflow for several of our current projects. I apologize if ...